Abstract
Accumulating evidence demonstrate that miRNAs can be treated as critical biomarkers in various complex human diseases. Thus, the identifications on potential miRNA-disease associations have become a hotpot for providing better understanding of disease pathology in this field. Recently, with various biological datasets, increasingly computational prediction approaches have been designed to uncover disease-related miRNAs for further experimental validation. To improve the prediction accuracy, several algorithms integrated miRNA similarities of known miRNA-disease associations to enhance the miRNA functional similarity network and disease similarities of known miRNA-disease associations to enhance the disease semantic similarity network. It is anticipated that machine learning methods would become an effective biological resource for clinical experimental guidance.
Keywords: microRNA, disease, lung cancer, network consistency projection, biological resources, pathology.
[http://dx.doi.org/10.1038/1921227a0] [PMID: 13882203]
[http://dx.doi.org/10.1016/j.cell.2007.02.029] [PMID: 17350564]
[http://dx.doi.org/10.1126/science.1103388] [PMID: 15539566]
[http://dx.doi.org/10.1186/1471-2164-16-S3-S4] [PMID: 25707808]
[http://dx.doi.org/10.1109/TCBB.2015.2476790]
[http://dx.doi.org/10.1038/nature03702] [PMID: 15944708]
[http://dx.doi.org/10.4161/rna.20481] [PMID: 22664915]
[http://dx.doi.org/10.1038/nrm1946] [PMID: 16723972]
[http://dx.doi.org/10.1016/S0092-8674(04)00045-5] [PMID: 14744438]
[http://dx.doi.org/10.1038/nature02871] [PMID: 15372042]
[http://dx.doi.org/10.1126/science.1113329] [PMID: 16141076]
[http://dx.doi.org/10.1126/science.1149460] [PMID: 18048652]
[http://dx.doi.org/10.1093/nar/gkq1027] [PMID: 21037258]
[http://dx.doi.org/10.1101/sqb.2006.71.039] [PMID: 17381291]
[http://dx.doi.org/10.1093/nar/gki200] [PMID: 15741182]
[http://dx.doi.org/10.1126/science.1121566] [PMID: 16311325]
[http://dx.doi.org/10.1016/j.gde.2005.08.005] [PMID: 16099643]
[http://dx.doi.org/10.1038/msb4100089] [PMID: 16969338]
[http://dx.doi.org/10.1016/j.tig.2004.09.010] [PMID: 15522457]
[http://dx.doi.org/10.1016/j.cell.2009.01.002] [PMID: 19167326]
[http://dx.doi.org/10.1161/CIRCRESAHA.107.163147] [PMID: 18063818]
[http://dx.doi.org/10.1371/journal.pone.0003420] [PMID: 18923704]
[http://dx.doi.org/10.1371/journal.pone.0020769] [PMID: 21698099]
[http://dx.doi.org/10.1016/j.ccr.2006.01.025] [PMID: 16530703]
[http://dx.doi.org/10.1056/NEJMoa1209026] [PMID: 23534542]
[http://dx.doi.org/10.1093/hmg/ddp070] [PMID: 19297399]
[http://dx.doi.org/10.1093/bioinformatics/btl190] [PMID: 16709589]
[http://dx.doi.org/10.3892/ol.2013.1251] [PMID: 23761828]
[http://dx.doi.org/10.1038/nm.1880] [PMID: 18931683]
[PMID: 22541087]
[http://dx.doi.org/10.1093/nar/gkt1023] [PMID: 24194601]
[http://dx.doi.org/10.1093/nar/gkn714] [PMID: 18927107]
[http://dx.doi.org/10.1186/1752-0509-4-S1-S2] [PMID: 20522252]
[http://dx.doi.org/10.1093/bioinformatics/btt677] [PMID: 24273243]
[http://dx.doi.org/10.1109/TNB.2015.2420754] [PMID: 25861086]
[http://dx.doi.org/10.1371/journal.pone.0058368] [PMID: 23560036]
[http://dx.doi.org/10.1186/1752-0509-7-101] [PMID: 24103777]
[http://dx.doi.org/10.1371/journal.pone.0070204] [PMID: 23950912]
[http://dx.doi.org/10.1039/c2mb25180a] [PMID: 22875290]
[http://dx.doi.org/10.1093/bioinformatics/btv039] [PMID: 25618864]
[http://dx.doi.org/10.1142/S0218001499000604]
[http://dx.doi.org/10.1109/TNN.2008.2004370] [PMID: 19054734]
[http://dx.doi.org/10.1158/1535-7163.MCT-11-0055] [PMID: 21768329]
[http://dx.doi.org/10.1038/srep05501] [PMID: 24975600]
[http://dx.doi.org/10.1038/srep13877] [PMID: 26347258]
[http://dx.doi.org/10.1093/bioinformatics/btq241] [PMID: 20439255]
[http://dx.doi.org/10.1038/srep36054] [PMID: 27779232]
[http://dx.doi.org/10.1093/bioinformatics/btr500] [PMID: 21893517]
[http://dx.doi.org/10.1038/srep21106] [PMID: 26880032]
[http://dx.doi.org/10.1158/0008-5472.CAN-09-3970] [PMID: 20484036]
[http://dx.doi.org/10.1002/pbc.22723] [PMID: 21157891]
[http://dx.doi.org/10.1038/sj.bjc.6604883] [PMID: 19156147]
[http://dx.doi.org/10.1016/j.canlet.2011.09.027] [PMID: 22014978]
[http://dx.doi.org/10.1093/carcin/bgs204] [PMID: 22689922]
[http://dx.doi.org/10.1109/TSMCB.2012.2192475] [PMID: 22562768]
[http://dx.doi.org/10.3748/wjg.v19.i34.5598] [PMID: 24039351]
[http://dx.doi.org/10.1080/15287394.2012.699856] [PMID: 22891887]
[http://dx.doi.org/10.1093/carcin/bgw079] [PMID: 27496804]
[http://dx.doi.org/10.1371/journal.pone.0185636] [PMID: 28968424]
[http://dx.doi.org/10.3322/caac.20107] [PMID: 21296855]
[http://dx.doi.org/10.1371/journal.pone.0092921] [PMID: 24705249]
[http://dx.doi.org/10.1371/journal.pone.0096670] [PMID: 24921248]
[http://dx.doi.org/10.1007/s10620-009-1008-9] [PMID: 19830559]
[http://dx.doi.org/10.1159/000113489] [PMID: 18196926]
[http://dx.doi.org/10.3892/mmr.2014.2144] [PMID: 24737193]
[PMID: 26261588]
[PMID: 21399871]
[http://dx.doi.org/10.1016/S0140-6736(12)61728-0] [PMID: 23245604]
[http://dx.doi.org/10.1002/pros.22572] [PMID: 22887127]
[http://dx.doi.org/10.1158/1541-7786.MCR-09-0443] [PMID: 20353999]
[http://dx.doi.org/10.1007/s11010-010-0700-6] [PMID: 21197560]
[http://dx.doi.org/10.1016/S0959-8049(11)70746-8]
[http://dx.doi.org/10.1016/j.urolonc.2009.02.002] [PMID: 19372056]
[http://dx.doi.org/10.1371/journal.pone.0043425] [PMID: 22937049]
[http://dx.doi.org/10.1039/C5MB00697J] [PMID: 26689259]
[http://dx.doi.org/10.2215/CJN.11561113] [PMID: 25107948]
[http://dx.doi.org/10.1038/ng1536] [PMID: 15806104]
[http://dx.doi.org/10.1016/j.ymeth.2014.08.004]
[http://dx.doi.org/10.2174/1389203715666140724084019] [PMID: 25059329]
[http://dx.doi.org/10.1109/TCBB.2015.2465893] [PMID: 26886732]